Publications

Get a pdf version of the Si elegans brochure

Some of the articles are copyright-protected and may be downloaded for personal use only. Permission to reprint or republish this material for promotional purposes or for creating new collective works for resale or redistribution to servers or lists, and the permission to reuse any copyrighted component of this work in other works must be obtained from the owners of the copyrights.

2016

Petrushin, A., Ferrara, L., and Blau, A. The Si elegans project at the interface of experimental and computational Caenorhabditis elegans neurobiology and behavior, Journal of Neural Engineering, 13(6): 065001 (1-8) (2016) (pdf)

Mujika, A., Epelde, G., Leškovský, P., and Oyarzun, D. Physically-Based Simulation and Web Visualization of C. elegans Behavioural Experiments in Biosystems & Biorobotics - Advances in Neurotechnology, Electronics and Informatics, R.A. Londral and P. Encarnação (Eds.), Vol. 12, Springer, p. 19-29 (2016) (pdf)

Machado, P., Wade, J., and Mcginnity, T.M. Si elegans: Modeling the C. elegans Nematode Nervous System Using High Performance FPGAS in Biosystems & Biorobotics - Advances in Neurotechnology, Electronics and Informatics, R.A. Londral and P. Encarnação (Eds.), Vol. 12, Springer, p. 31-45 (2016) (pdf)

Ferrara, L., Petrushin, A., Liberale, C., Brannick, D., Connolly, B., Mitchell, P., and Blau, A. Comparison of electro-optical strategies for mimicking C. elegans network interconnectivity in hardware in Biosystems & Biorobotics - Advances in Neurotechnology, Electronics and Informatics, R.A. Londral and P. Encarnação (Eds.), Vol. 12, Springer, p. 79-98 (2016) (pdf)

2015

Costalago Meruelo, A., Machado, P., Appiah, K. and Mcginnity, M. Si elegans: A computational model of C. elegans muscle response to light in the Proceedings of the 3rd International Congress on Neurotechnology, Electronics and Informatics Lisbon, Portugal, 121-126 (2015) (pdf)

Ferrara, L., Petrushin, A. and Blau, A. An electro-optical connectome prototype for eight neuron representations in FPGA technology in the Proceedings of the  3rd International Congress on Neurotechnology, Electronics and Informatics Lisbon, Portugal, 127-132 (2015) (pdf)

Morgan, F., Krewer, F., Callaly, F., Coffey, A. and Mc Ginley, B. Web-Enabled Neuron Model Hardware Implementation and Testing  in the Proceedings of the 3rd International Congress on Neurotechnology, Electronics and Informatics Lisbon, Portugal, 138-145 (2015) (pdf)

G.Epelde, A. Mujika, R. Álvarez, A. de Mauro, F.Krewer, P. Leškovský, A. Blau, Input Encoding Proposal for Behavioral Experiments with a Virtual C. elegans Representation in the Proceedings of the 3rd International Congress on Neurotechnology, Electronics and Informatics Lisbon, Portugal, 115-120 (2015) (pdf)

Mujika, A., Leškovský, P., Epelde, G., Álvarez, R. and Oyarzun, D. Neuronal Activity Visualization Using Biologically Accurately Placed Neurons in WebGL in the Proceedings of the 3rd International Congress on Neurotechnology, Electronics and Informatics Lisbon, Portugal, 91-96 (2015) (pdf)

Petrushin, A., Ferrara, L. and Blau, A. Past and recent endeavours to simulate Caenorhabditis elegans in the Proceedings of the 3rd International Congress on Neurotechnology, Electronics and Informatics Lisbon, Portugal, 133-137 (2015) (pdf)

Machado, P., Wade, J.J., Appiah, K. and Mcginnity, T.M. Si elegans: Hardware Architecture and Communications Protocol in the Proceedings of the International Joint Conference on Neural Networks (IJCNN), Killarney, Ireland, 3473-3479 (2015) (pdf)

Petrushin, A., Ferrara, L., and Blau, A. The Si elegans connectome: A neuromimetic emulation of neural signal transfer with DMD-structured light in Proceedings of the SPIE Photonics West, Emerging Digital Micromirror Device Based Systems and Applications VII, Session 6: Novel and Emerging DMD Applications,  M.R. Douglass, P.S. King, and B.L. Lee (Eds.). Vol. 9376, SPIE, p. pp. 17 (2015) (pdf)

G. Epelde A. Mujika, P. Leskovsky, A. De Mauro, Public Access Architecture Design of an FPGA-Hardware-based Nervous System Emulation Remote Lab in International Joint Conference, Á. Herrero, B. Baruque, J. Sedano, H. Quintián, and E. Corchado (Eds.) Springer International Publishing, 559-569 (2015) (pdf)

2014

Mujika, A., Epelde, G., Mauro, A.D., and Oyarzun, D. Visualization of a Virtual Caenorhabditis elegans inWebGL in the Proceedings of the 2nd International Congress on Neurotechnology, Electronics and Informatics, Rome, Italy,  164-168 (2014) (pdf)

Petrushin, A., Ferrara, L., Liberale, C., and Blau, A. Towards an electro-optical emulation of the C. elegans connectome in the Proceedings of the 2nd International Congress on Neurotechnology, Electronics and Informatics, Rome, Italy,  184-188 (2014) (pdf)

Machado, P., Wade, J., and Mcginnity, T.M. Computational Modelling of C. elegans Nematode Nervous System using FPGAs in the Proceedings of the 2nd International Congress on Neurotechnology, Electronics and Informatics, Rome, Italy,  169-176 (2014) (pdf)

Blau, A., Callaly, F., Cawley, S., Coffey, A., De Mauro, A., Epelde, G., Ferrara, L., Krewer, F., Liberale, C., Machado, P., Maclair, G., Mcginnity, T.M., Morgan, F., Mujika, A., Petrushin, A., Robin, G., and Wade, J. Exploring neural principles with Si elegans, a neuromimetic representation of the nematode Caenorhabditis elegans in the Proceedings of the 2nd International Congress on Neurotechnology, Electronics and Informatics, Rome, Italy,  189-194 (2014) (pdf)

Mujika, A., Pasealekua, M., De Mauro, A., Robin, G., Epelde, G., and Oyarzun, D. A Physically-based Simulation of a Caenorhabditis elegans at the WSCG2014 - 22nd International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision 2015, Pilsen, Czech Republic 177-184 (2014) (pdf)

Blau, A., Callaly, F., Cawley, S., Coffey, A., De Mauro, A., Epelde, G., Ferrara, L., Krewer, F., Liberale, C., Machado, P., Maclair, G., Mcginnity, T.-M., Morgan, F., Mujika, A., Petrushin, A., Robin, G., and Wade, J. The Si elegans Project – The Challenges and Prospects of Emulating Caenorhabditis elegans in Biomimetic and Biohybrid Systems, A. Duff, et al. (Eds.), Lecture Notes in Computer Science, Vol. 8608, Springer International Publishing, p. 436-438 (2014) (pdf)

Machado, P., Wade, J., and Mcginnity, T.M. Si elegans: FPGA hardware emulation of C. elegans nematode nervous system at the 2014 Sixth World Congress on Nature and Biologically Inspired Computing (NaBIC), 65-71 (2014) (pdf)